#------------------------------------------------------------------------------
#$Date: 2025-08-20 23:21:57 +0200 (Wed, 20 Aug 2025) $
#$Revision: 301837 $
#$URL: svn://saulius.grazulis.lt/cod-secondary/cif/4/31/64/4316413.cif $
#------------------------------------------------------------------------------
#
# This file is available in the Crystallography Open Database (COD),
# http://www.crystallography.net/
#
# All data on this site have been placed in the public domain by the
# contributors.
#
data_4316413
loop_
_publ_author_name
'Alvaro S. de Sousa'
'Manuel A. Fernandes'
'Kamentheren Padayachy'
'Helder M. Marques'
_publ_section_title
;
 Amino-Alcohol Ligands: Synthesis and Structure of
 N,N'-bis(2-hydroxycyclopentyl)ethane-1,2-diamine and Its Salts, and an
 Assessment of Its Fitness and That of Related Ligands for Complexing
 Metal Ions
;
_journal_name_full               'Inorganic Chemistry'
_journal_page_first              8003
_journal_page_last               8011
_journal_paper_doi               10.1021/ic101018b
_journal_volume                  49
_journal_year                    2010
_chemical_formula_moiety
;
C12 H26 N2 O2, 2(Cl O4)
;
_chemical_formula_sum            'C12 H26 Cl2 N2 O10'
_chemical_formula_weight         429.25
_space_group_IT_number           2
_symmetry_cell_setting           triclinic
_symmetry_space_group_name_Hall  '-P 1'
_symmetry_space_group_name_H-M   'P -1'
_atom_sites_solution_hydrogens   geom
_atom_sites_solution_primary     direct
_atom_sites_solution_secondary   difmap
_audit_creation_method           SHELXL-97
_cell_angle_alpha                99.026(2)
_cell_angle_beta                 106.072(2)
_cell_angle_gamma                107.9320(10)
_cell_formula_units_Z            1
_cell_length_a                   7.1544(2)
_cell_length_b                   7.4987(2)
_cell_length_c                   9.7346(2)
_cell_measurement_reflns_used    2491
_cell_measurement_temperature    173(2)
_cell_measurement_theta_max      28.24
_cell_measurement_theta_min      2.96
_cell_volume                     460.41(2)
_computing_cell_refinement       'Bruker SMART'
_computing_data_collection       'Bruker SMART'
_computing_data_reduction        'Bruker SAINT'
_computing_molecular_graphics    'Bruker SHELXTL'
_computing_publication_material  'Bruker SHELXTL'
_computing_structure_refinement  'SHELXL-97 (Sheldrick, 1997)'
_computing_structure_solution    'Bruker SHELXTL'
_diffrn_ambient_temperature      173(2)
_diffrn_measured_fraction_theta_full 0.999
_diffrn_measured_fraction_theta_max 0.999
_diffrn_measurement_device_type  'CCD area detector'
_diffrn_measurement_method       'phi and omega scans'
_diffrn_radiation_monochromator  graphite
_diffrn_radiation_source         'fine-focus sealed tube'
_diffrn_radiation_type           MoK\a
_diffrn_radiation_wavelength     0.71073
_diffrn_reflns_av_R_equivalents  0.0512
_diffrn_reflns_av_sigmaI/netI    0.0438
_diffrn_reflns_limit_h_max       8
_diffrn_reflns_limit_h_min       -9
_diffrn_reflns_limit_k_max       9
_diffrn_reflns_limit_k_min       -9
_diffrn_reflns_limit_l_max       12
_diffrn_reflns_limit_l_min       -12
_diffrn_reflns_number            4620
_diffrn_reflns_theta_full        27.99
_diffrn_reflns_theta_max         27.99
_diffrn_reflns_theta_min         2.26
_exptl_absorpt_coefficient_mu    0.407
_exptl_absorpt_correction_T_max  0.9490
_exptl_absorpt_correction_T_min  0.8476
_exptl_absorpt_correction_type   integration
_exptl_absorpt_process_details
;
Face indexed absorption corrections carried out using XPREP
;
_exptl_crystal_colour            colourless
_exptl_crystal_density_diffrn    1.548
_exptl_crystal_density_method    'not measured'
_exptl_crystal_description       triangular
_exptl_crystal_F_000             226
_exptl_crystal_size_max          0.42
_exptl_crystal_size_mid          0.39
_exptl_crystal_size_min          0.13
_refine_diff_density_max         0.464
_refine_diff_density_min         -0.380
_refine_diff_density_rms         0.068
_refine_ls_extinction_method     none
_refine_ls_goodness_of_fit_ref   1.050
_refine_ls_hydrogen_treatment    constr
_refine_ls_matrix_type           full
_refine_ls_number_parameters     119
_refine_ls_number_reflns         2218
_refine_ls_number_restraints     0
_refine_ls_restrained_S_all      1.050
_refine_ls_R_factor_all          0.0476
_refine_ls_R_factor_gt           0.0418
_refine_ls_shift/su_max          0.000
_refine_ls_shift/su_mean         0.000
_refine_ls_structure_factor_coef Fsqd
_refine_ls_weighting_details
'calc w=1/[\s^2^(Fo^2^)+(0.0600P)^2^+0.2094P] where P=(Fo^2^+2Fc^2^)/3'
_refine_ls_weighting_scheme      calc
_refine_ls_wR_factor_gt          0.1125
_refine_ls_wR_factor_ref         0.1167
_reflns_number_gt                1912
_reflns_number_total             2218
_reflns_threshold_expression     >2sigma(I)
_cod_data_source_file            ic101018b_si_002_3.cif
_cod_data_source_block           766043
_cod_depositor_comments
;
The following automatic conversions were performed:

'_symmetry_cell_setting' value 'Triclinic' changed to 'triclinic'
according to the built-in table from CIF Core dictionary named
'cif_core.dic' version 2.4.1 from 2010-06-29.

Automatic conversion script
Id: cif_fix_values 1646 2011-03-28 12:23:43Z adriana 
;
_cod_database_code               4316413
loop_
_symmetry_equiv_pos_as_xyz
'x, y, z'
'-x, -y, -z'
loop_
_atom_site_label
_atom_site_type_symbol
_atom_site_fract_x
_atom_site_fract_y
_atom_site_fract_z
_atom_site_U_iso_or_equiv
_atom_site_adp_type
_atom_site_occupancy
_atom_site_symmetry_multiplicity
_atom_site_calc_flag
_atom_site_refinement_flags
_atom_site_disorder_assembly
_atom_site_disorder_group
C1 C 0.2233(3) 0.3869(2) 0.28429(18) 0.0201(3) Uani 1 1 d . . .
H1 H 0.3317 0.5209 0.3131 0.024 Uiso 1 1 calc R . .
C2 C 0.3267(3) 0.2404(2) 0.26523(18) 0.0216(3) Uani 1 1 d . . .
H2 H 0.2279 0.1079 0.2562 0.026 Uiso 1 1 calc R . .
C3 C 0.3602(3) 0.2482(3) 0.1171(2) 0.0299(4) Uani 1 1 d . . .
H3A H 0.4989 0.3464 0.1331 0.036 Uiso 1 1 calc R . .
H3B H 0.3514 0.1200 0.0645 0.036 Uiso 1 1 calc R . .
C4 C 0.1854(4) 0.3039(5) 0.0286(2) 0.0532(7) Uani 1 1 d . . .
H4A H 0.0887 0.1951 -0.0590 0.064 Uiso 1 1 calc R . .
H4B H 0.2447 0.4187 -0.0061 0.064 Uiso 1 1 calc R . .
C5 C 0.0677(3) 0.3509(3) 0.13049(19) 0.0288(4) Uani 1 1 d . . .
H5A H 0.0351 0.4679 0.1186 0.035 Uiso 1 1 calc R . .
H5B H -0.0639 0.2403 0.1107 0.035 Uiso 1 1 calc R . .
C6 C 0.0181(2) 0.4987(2) 0.42632(18) 0.0194(3) Uani 1 1 d . . .
H6A H -0.1178 0.4535 0.3443 0.023 Uiso 1 1 calc R . .
H6B H 0.1024 0.6313 0.4270 0.023 Uiso 1 1 calc R . .
N1 N 0.1306(2) 0.3652(2) 0.40396(15) 0.0187(3) Uani 1 1 d . . .
H1B H 0.0387 0.2390 0.3811 0.022 Uiso 1 1 calc R . .
H1C H 0.2361 0.3875 0.4916 0.022 Uiso 1 1 calc R . .
O1 O 0.51285(18) 0.29202(18) 0.38903(13) 0.0235(3) Uani 1 1 d . . .
H1A H 0.5200 0.1918 0.4147 0.035 Uiso 1 1 calc R . .
O2 O 0.2599(5) 0.0015(3) 0.5261(2) 0.0841(8) Uani 1 1 d . . .
O3 O 0.2975(2) 0.28654(19) 0.68731(16) 0.0314(3) Uani 1 1 d . . .
O4 O 0.5486(3) 0.1480(3) 0.7415(4) 0.0958(10) Uani 1 1 d . . .
O5 O 0.2206(2) -0.0109(2) 0.75267(16) 0.0376(4) Uani 1 1 d . . .
Cl1 Cl 0.33231(7) 0.10762(6) 0.67832(5) 0.02785(16) Uani 1 1 d . . .
loop_
_atom_site_aniso_label
_atom_site_aniso_U_11
_atom_site_aniso_U_22
_atom_site_aniso_U_33
_atom_site_aniso_U_23
_atom_site_aniso_U_13
_atom_site_aniso_U_12
C1 0.0220(7) 0.0206(8) 0.0224(8) 0.0071(6) 0.0117(6) 0.0098(6)
C2 0.0226(8) 0.0213(8) 0.0222(8) 0.0041(6) 0.0088(6) 0.0099(6)
C3 0.0350(9) 0.0361(10) 0.0243(8) 0.0053(7) 0.0153(7) 0.0177(8)
C4 0.0692(16) 0.092(2) 0.0279(10) 0.0218(12) 0.0246(11) 0.0590(16)
C5 0.0316(9) 0.0386(10) 0.0229(8) 0.0120(8) 0.0106(7) 0.0190(8)
C6 0.0197(7) 0.0212(8) 0.0229(8) 0.0060(6) 0.0104(6) 0.0122(6)
N1 0.0200(6) 0.0201(7) 0.0200(6) 0.0060(5) 0.0094(5) 0.0105(5)
O1 0.0219(6) 0.0227(6) 0.0257(6) 0.0049(5) 0.0058(5) 0.0112(5)
O2 0.179(3) 0.0331(9) 0.0507(12) 0.0087(8) 0.0690(15) 0.0280(12)
O3 0.0418(8) 0.0233(7) 0.0374(7) 0.0109(6) 0.0173(6) 0.0187(6)
O4 0.0346(10) 0.0552(12) 0.217(3) 0.0725(17) 0.0424(14) 0.0251(9)
O5 0.0503(9) 0.0270(7) 0.0374(8) 0.0135(6) 0.0233(7) 0.0070(6)
Cl1 0.0341(3) 0.0184(2) 0.0402(3) 0.01145(18) 0.0223(2) 0.01162(17)
loop_
_atom_type_symbol
_atom_type_description
_atom_type_scat_dispersion_real
_atom_type_scat_dispersion_imag
_atom_type_scat_source
C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
Cl Cl 0.1484 0.1585 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
loop_
_geom_angle_atom_site_label_1
_geom_angle_atom_site_label_2
_geom_angle_atom_site_label_3
_geom_angle
_geom_angle_site_symmetry_1
_geom_angle_site_symmetry_3
_geom_angle_publ_flag
N1 C1 C2 110.35(13) . . ?
N1 C1 C5 115.39(14) . . ?
C2 C1 C5 104.55(13) . . ?
N1 C1 H1 108.8 . . ?
C2 C1 H1 108.8 . . ?
C5 C1 H1 108.8 . . ?
O1 C2 C1 110.03(13) . . ?
O1 C2 C3 114.96(14) . . ?
C1 C2 C3 102.64(14) . . ?
O1 C2 H2 109.7 . . ?
C1 C2 H2 109.7 . . ?
C3 C2 H2 109.7 . . ?
C4 C3 C2 105.37(15) . . ?
C4 C3 H3A 110.7 . . ?
C2 C3 H3A 110.7 . . ?
C4 C3 H3B 110.7 . . ?
C2 C3 H3B 110.7 . . ?
H3A C3 H3B 108.8 . . ?
C3 C4 C5 107.84(16) . . ?
C3 C4 H4A 110.1 . . ?
C5 C4 H4A 110.1 . . ?
C3 C4 H4B 110.1 . . ?
C5 C4 H4B 110.1 . . ?
H4A C4 H4B 108.5 . . ?
C1 C5 C4 102.63(15) . . ?
C1 C5 H5A 111.2 . . ?
C4 C5 H5A 111.2 . . ?
C1 C5 H5B 111.2 . . ?
C4 C5 H5B 111.2 . . ?
H5A C5 H5B 109.2 . . ?
N1 C6 C6 108.88(16) . 2_566 ?
N1 C6 H6A 109.9 . . ?
C6 C6 H6A 109.9 2_566 . ?
N1 C6 H6B 109.9 . . ?
C6 C6 H6B 109.9 2_566 . ?
H6A C6 H6B 108.3 . . ?
C6 N1 C1 114.04(13) . . ?
C6 N1 H1B 108.7 . . ?
C1 N1 H1B 108.7 . . ?
C6 N1 H1C 108.7 . . ?
C1 N1 H1C 108.7 . . ?
H1B N1 H1C 107.6 . . ?
C2 O1 H1A 109.5 . . ?
O4 Cl1 O5 109.91(13) . . ?
O4 Cl1 O2 108.95(19) . . ?
O5 Cl1 O2 107.95(11) . . ?
O4 Cl1 O3 109.38(11) . . ?
O5 Cl1 O3 111.18(9) . . ?
O2 Cl1 O3 109.44(12) . . ?
loop_
_geom_bond_atom_site_label_1
_geom_bond_atom_site_label_2
_geom_bond_distance
_geom_bond_site_symmetry_2
_geom_bond_publ_flag
C1 N1 1.498(2) . ?
C1 C2 1.517(2) . ?
C1 C5 1.523(2) . ?
C1 H1 1.0000 . ?
C2 O1 1.423(2) . ?
C2 C3 1.533(2) . ?
C2 H2 1.0000 . ?
C3 C4 1.523(3) . ?
C3 H3A 0.9900 . ?
C3 H3B 0.9900 . ?
C4 C5 1.533(3) . ?
C4 H4A 0.9900 . ?
C4 H4B 0.9900 . ?
C5 H5A 0.9900 . ?
C5 H5B 0.9900 . ?
C6 N1 1.4907(19) . ?
C6 C6 1.525(3) 2_566 ?
C6 H6A 0.9900 . ?
C6 H6B 0.9900 . ?
N1 H1B 0.9200 . ?
N1 H1C 0.9200 . ?
O1 H1A 0.8400 . ?
O2 Cl1 1.4311(19) . ?
O3 Cl1 1.4321(13) . ?
O4 Cl1 1.411(2) . ?
O5 Cl1 1.4272(14) . ?
loop_
_geom_hbond_atom_site_label_D
_geom_hbond_atom_site_label_H
_geom_hbond_atom_site_label_A
_geom_hbond_distance_DH
_geom_hbond_distance_HA
_geom_hbond_distance_DA
_geom_hbond_angle_DHA
_geom_hbond_site_symmetry_A
N1 H1B O5 0.92 2.02 2.863(2) 152 2_556
N1 H1B Cl1 0.92 2.93 3.8197(14) 164 2_556
N1 H1C O3 0.92 2.14 2.916(2) 141 .
N1 H1C O1 0.92 2.38 2.9439(18) 120 2_666
O1 H1A O2 0.84 2.47 3.194(3) 146 2_656
O1 H1A O2 0.84 2.58 3.102(2) 122 .
O1 H1A O4 0.84 2.58 3.190(3) 131 2_656
O1 H1A Cl1 0.84 2.89 3.5309(12) 135 2_656
loop_
_geom_torsion_atom_site_label_1
_geom_torsion_atom_site_label_2
_geom_torsion_atom_site_label_3
_geom_torsion_atom_site_label_4
_geom_torsion
_geom_torsion_site_symmetry_1
_geom_torsion_site_symmetry_2
_geom_torsion_site_symmetry_3
_geom_torsion_site_symmetry_4
_geom_torsion_publ_flag
N1 C1 C2 O1 -71.06(17) . . . . ?
C5 C1 C2 O1 164.28(14) . . . . ?
N1 C1 C2 C3 166.11(14) . . . . ?
C5 C1 C2 C3 41.45(17) . . . . ?
O1 C2 C3 C4 -148.45(19) . . . . ?
C1 C2 C3 C4 -29.0(2) . . . . ?
C2 C3 C4 C5 6.4(3) . . . . ?
N1 C1 C5 C4 -158.54(18) . . . . ?
C2 C1 C5 C4 -37.1(2) . . . . ?
C3 C4 C5 C1 18.6(3) . . . . ?
C6 C6 N1 C1 -165.34(16) 2_566 . . . ?
C2 C1 N1 C6 -177.72(13) . . . . ?
C5 C1 N1 C6 -59.52(19) . . . . ?
loop_
_cod_related_entry_id
_cod_related_entry_database
_cod_related_entry_code
1 PubChem 139132399
